Mycobacterium spp., rod-shaped cells belonging to the phylum Actinomycetes, lack the Min- and Noc/Slm systems responsible for preventing the placement of division sites at the poles or over the nucleoids to ensure septal assembly at mid-cell. We show that the position for establishment of the FtsZ-ring in exponentially growing Mycobacterium marinum and Mycobacterium smegmatis cells is nearly random, and that the cells often divide non-medially, producing two unequal but viable daughters. Septal sites and cellular
growth disclosed by staining with the membrane specific dye FM4-64 and fluorescent antibiotic vancomycin (FL-Vanco), respectively, showed that many division sites were off-centre, often over the nucleoids, and that apical cell growth was frequently unequal at the two poles. DNA transfer through the division septum was detected, and translocation activity was supported by the presence of a putative mycobacterial DNA translocase (MSMEG2690) at the majority of the division sites. Time-lapse imaging of single live cells through several generations confirmed both acentric division site placement and unequal polar growth in mycobacteria. Our evidence suggests that post-septal DNA transport and unequal polar growth may compensate for the non-medial division site placement in Mycobacterium spp.
Acceso a la publicación
Reloj
miércoles, 27 de marzo de 2013
sábado, 23 de marzo de 2013
A Plasmid-Encoded Phosphatase Regulates Bacillus subtilis Biofilm Architecture, Sporulation, and Genetic Competence
B. subtilis biofilm formation is tightly regulated by elaborate signaling pathways. In contrast to domesticated lab strains of B. subtilis,
which form smooth, essentially featureless colonies, undomesticated
strains such as NCIB3610 form architecturally complex
biofilms. NCIB3610 also encodes an 80-kb plasmid
absent from laboratory strains, and mutations in a plasmid-encoded
homolog
of a Rap protein, RapP, caused a hyper-rugose
biofilm phenotype.
Here we explored the role of rapP-phrP in biofilm formation. We found that RapP is a phosphatase that dephosphorylates the intermediate response regulator Spo0F. RapP appears to employ a catalytic glutamate to dephosphorylate the Spo0F aspartylphosphate, and the implications of the RapP catalytic glutamate are discussed. In addition to regulating B. subtilis biofilm formation, we found that RapP regulates sporulation and genetic competence as a result of its ability to dephosphorylate Spo0F. Interestingly, while rap-phr gene cassettes routinely form regulatory pairs, i.e., the mature phr gene product inhibits the activity of the rap gene product, the phrP gene product did not inhibit RapP activity in our assays. RapP activity was, however, inhibited by PhrH in vivo but not in vitro.
Additional genetic analysis suggests that RapP is directly inhibited by peptide binding. We speculate that PhrH could be subject to post-translational modification in vivo and directly inhibit RapP activity, or, more likely, PhrH upregulates the expression of a peptide that in turn directly binds to RapP and inhibits its Spo0F phosphatase activity.
Acceso al trabajo
Here we explored the role of rapP-phrP in biofilm formation. We found that RapP is a phosphatase that dephosphorylates the intermediate response regulator Spo0F. RapP appears to employ a catalytic glutamate to dephosphorylate the Spo0F aspartylphosphate, and the implications of the RapP catalytic glutamate are discussed. In addition to regulating B. subtilis biofilm formation, we found that RapP regulates sporulation and genetic competence as a result of its ability to dephosphorylate Spo0F. Interestingly, while rap-phr gene cassettes routinely form regulatory pairs, i.e., the mature phr gene product inhibits the activity of the rap gene product, the phrP gene product did not inhibit RapP activity in our assays. RapP activity was, however, inhibited by PhrH in vivo but not in vitro.
Additional genetic analysis suggests that RapP is directly inhibited by peptide binding. We speculate that PhrH could be subject to post-translational modification in vivo and directly inhibit RapP activity, or, more likely, PhrH upregulates the expression of a peptide that in turn directly binds to RapP and inhibits its Spo0F phosphatase activity.
Acceso al trabajo
Improvement of Natamycin Production by Engineering of Phosphopantetheinyl Transferases in Streptomyces chattanoogensis L10
Phosphopantetheinyl transferases (PPTases) are essential to the
activities of type I/II polyketide synthases (PKSs) and non
ribosomal peptide synthetases (NRPSs) through
converting acyl carrier proteins (ACPs) in PKSs and peptidyl carrier
proteins
(PCPs) in NRPSs from inactive apo-forms into active
holo-forms, leading to biosynthesis of polyketides and non ribosomal
peptides.
The industrial natamycin (NTM) producer, Streptomyces chattanoogensis L10, contains two PPTases (SchPPT and SchACPS), and five PKSs. Biochemical characterization of these two PPTases shows: SchPPT catalyzes the phosphopantetheinylation of ACPs in both type I PKSs and type II PKSs; SchACPS catalyzes the phosphopantetheinylation of ACPs in type II PKSs and fatty acid synthases (FASs); the specificity of SchPPT is possibly controlled by its C-terminus.
Inactivation of SchPPT in S. chattanoogensis L10 abolished production of NTM but not the spore pigment, while overexpression of SchPPT not only increased the NTM production by about 40% but also accelerated productions of both NTM and the spore pigment.
Thus, we elucidated a comprehensive phosphopantetheinylation network of PKSs and improved the polyketide production by engineering the cognate PPTase in bacteria.
Acceso al trabajo
The industrial natamycin (NTM) producer, Streptomyces chattanoogensis L10, contains two PPTases (SchPPT and SchACPS), and five PKSs. Biochemical characterization of these two PPTases shows: SchPPT catalyzes the phosphopantetheinylation of ACPs in both type I PKSs and type II PKSs; SchACPS catalyzes the phosphopantetheinylation of ACPs in type II PKSs and fatty acid synthases (FASs); the specificity of SchPPT is possibly controlled by its C-terminus.
Inactivation of SchPPT in S. chattanoogensis L10 abolished production of NTM but not the spore pigment, while overexpression of SchPPT not only increased the NTM production by about 40% but also accelerated productions of both NTM and the spore pigment.
Thus, we elucidated a comprehensive phosphopantetheinylation network of PKSs and improved the polyketide production by engineering the cognate PPTase in bacteria.
Acceso al trabajo
miércoles, 20 de marzo de 2013
Microbial metabolic exchange in 3D
Mono- and multispecies microbial populations alter the chemistry of
their surrounding environments during colony development thereby
influencing multicellular behavior and interspecies interactions of
neighboring microbes. Here we present a methodology that enables the
creation of three-dimensional (3D) models of a microbial chemotype that
can be correlated to the colony phenotype through multimodal imaging
analysis.
These models are generated by performing matrix-assisted laser
desorption ionization time-of-flight (MALDI-TOF) imaging mass
spectrometry (IMS) on serial cross-sections of microbial colonies grown
on 8 mm deep agar,
registering data sets of each serial section in MATLAB to create a
model, and then superimposing the model with a photograph of the
colonies themselves.
As proof-of-principle, 3D models were used to
visualize metabolic exchange during microbial interactions between Bacillus subtilis and Streptomyces coelicolor, as well as, Candida albicans and Pseudomonas aeruginosa.
The resulting models were able to capture the depth profile of secreted
metabolites within the agar medium and revealed properties of certain
mass signals that were previously not observable using two-dimensional
MALDI-TOF IMS.
Enlace al trabajo
Etiquetas:
IMS,
interacciones microbianas,
MALDI-TOF
Observing the invisible through imaging mass spectrometry
Many microbes can be cultured as single-species communities. The microbial communities, or colonies, curate their environment via
metabolic exchange factors such as released natural products. To date,
there are very few tools available that can monitor, in a systematic and
informative fashion, the metabolic release patterns by microbes grown
in a pure or mixed culture. There are significant challenges in the
ability to monitor the metabolic secretome from growing microbial
colonies. For example, the chemistries of such molecules can be
extremely diverse, ranging from polyketides (e.g. erythromycin), non-ribosomal peptides (e.g. penicillin), isoprenoids (e.g. artemisinin), fatty acids (e.g. octanoic acid), microcins (e.g. Nisin), to peptides (e.g. microcin C7), poly-nucleotides and proteins.
Because of this chemical diversity, most of these molecules are
extracted prior to analysis and studied one at a time and apart from the
native spatial context of a microbial colony. Thus, limited information
is obtained about the metabolic output of colonies in a synergetic or
multiplexed fashion.
Matrix-assisted
laser desorption/ionization-time of flight (MALDI-TOF) imaging mass
spectrometry (IMS) is a powerful tool for simultaneously investigating
the spatial distribution of multiple different biological molecules.
The technique offers a molecular view of the peptides, proteins,
polymers and lipids produced by a microbial colony without the need of
exogenous labels or radioactive trace material.
Target compounds can be measured and visualized simultaneously and in a
high throughput manner within a single experiment. IMS extends beyond
techniques such as MALDI profiling or MALDI intact cell analysis.
Although invaluable, these techniques give a broad view of the
metabolites produced in reference to a growing colony, where discretely
secreted low global concentration but high local concentration
metabolites could be missed.
jueves, 7 de marzo de 2013
Nuevas funciones para los sistemas de restricción-modificación
Kommireddy Vasu and Valakunja Nagaraja
SUMMARY
Restriction-modification (R-M) systems are ubiquitous and are often
considered primitive immune systems in bacteria. Their
diversity and prevalence across the prokaryotic
kingdom are an indication of their success as a defense mechanism
against
invading genomes. However, their cellular
defense function does not adequately explain the basis for their
immaculate specificity
in sequence recognition and nonuniform
distribution, ranging from none to too many, in diverse species. The
present review
deals with new developments which provide
insights into the roles of these enzymes in other aspects of cellular
function.
In this review, emphasis is placed on novel
hypotheses and various findings that have not yet been dealt with in a
critical
review. Emerging studies indicate their role in
various cellular processes other than host defense, virulence, and even
controlling
the rate of evolution of the organism. We also
discuss how R-M systems could have successfully evolved and be involved
in
additional cellular portfolios, thereby
increasing the relative fitness of their hosts in the population.
Copia del trabajo en la Moodle.
Copia del trabajo en la Moodle.
Etiquetas:
enzimas de restricción,
host defense,
virulencia
Bacterias que degradan el iboprufeno
El ibuprofeno es un antiinflamatorio no esteroideo (AINE), utilizado frecuentemente como antipirético y para el alivio sintomático del dolor de cabeza (cefalea), dolor dental (odontalgia), dolor muscular o mialgia, molestias de la menstruación (dismenorrea),
dolor neurológico de carácter leve y dolor postquirúrgico. También se
usa para tratar cuadros inflamatorios, como los que se presentan en
artritis, artritis reumatoide (AR) y artritis gotosa. En el último nº de Microbiology (SGM) se ha publicado un trabajo en el que se describe un microorganismo que degrada el iboprufeno.
Abstract
Sphingomonas Ibu-2 has the unusual ability to cleave the acid
side chain from the pharmaceutical ibuprofen and related arylacetic acid
derivatives to yield corresponding catechols under
aerobic conditions via a previously uncharacterized mechanism. Screening
a chromosomal library of Ibu-2 DNA in Escherichia coli
EPI300 allowed us to identify one fosmid clone (pFOS3G7) that conferred
the ability to metabolize ibuprofen to isobutylcatechol.
Iboprufeno |
Enlace al artículo
Etiquetas:
clonación,
degradación,
fosmidos,
iboprufeno
viernes, 1 de marzo de 2013
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